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SRX14722116: GSM6008840: Lv2, scRNAseq; Loligo vulgaris; RNA-Seq
8 ILLUMINA (Illumina NovaSeq 6000) runs: 510.9M spots, 59.5G bases, 18.9Gb downloads

External Id: GSM6008840_r1
Submitted by: Sprecher, Biology, University of Fribourg
Study: Molecular characterization of cell types in the squid Loligo vulgaris
show Abstracthide Abstract
Cephalopods have long been getting a lot of attention for their fascinating behavioral abilities and for the complexity of their nervous systems that set them apart from other mollusks. Because of the great evolutionary distance that separates vertebrates from mollusks, it is evident that higher cognitive features have evolved independently in this clade although they sometimes resemble cognitive functions of vertebrates. Alongside their complex behavioral abilities, cephalopods have evolved specialized cells and tissues, such as the chromatophores for camouflage or suckers to grasp prey. Gaining a better understanding of the biology of various species of cephalopods can significantly improve our knowledge of how these animals evolved and better identify the mechanisms that drive the astonishing faculties of their nervous systems. In this study, we performed single-cell transcriptomics of whole heads of Loligo vulgaris pre-hatchlings. We characterized the different cell types in the head of these animals and explored the expression patterns of core cell type markers by hybridization chain reaction. We were able to thoroughly describe some major components of the squid nervous that play important roles for the maintenance, development and sensory function in the nervous system of these animals. Overall design: Whole heads of Loligo vulgaris pre-hatchlings were dissociated and sequenced.
Sample: Lv2, scRNAseq
SAMN27285740 • SRS12484226 • All experiments • All runs
Organism: Loligo vulgaris
Library:
Name: GSM6008840
Instrument: Illumina NovaSeq 6000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: Single-cell RNAseq libraries were prepared using a Chromium Single Cell 3' Library & Gel Bead Kit v2 or v3 (10X Genomics), according to the manufacturer's protocol (User Guide). Two chips were loaded with the accurate volumes calculated based on the “Cell Suspension Volume Calculator Table”. The initial single-cell suspension being estimated at >600 cells/μl, we targeted to recover a maximum 10000 cells. Once GEMs were obtained, reverse transcription and cDNA amplification steps were performed. scRNA-seq
Runs: 8 runs, 510.9M spots, 59.5G bases, 18.9Gb
Run# of Spots# of BasesSizePublished
SRR1859350765,181,8857.6G2.4Gb2022-04-09
SRR1859350864,494,4677.5G2.4Gb2022-04-09
SRR1859350962,276,1377.2G2.3Gb2022-04-09
SRR1859351061,542,4457.2G2.3Gb2022-04-09
SRR1859351162,452,5477.3G2.3Gb2022-04-09
SRR1859351261,810,5697.2G2.3Gb2022-04-09
SRR1859351366,970,1447.8G2.5Gb2022-04-09
SRR1859351466,156,0967.7G2.5Gb2022-04-09

ID:
21077735

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